PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01802g02017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 352aa    MW: 38683.2 Da    PI: 6.13
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01802g02017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44.1e-16141187455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  ErrRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Niben101Scf01802g02017.1 141 VHNLSERRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 187
                               6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-20134197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-20135197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.07137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.25E-14140182No hitNo description
PfamPF000101.3E-13141187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-18143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MANNNIYHRT ATTFSLTEPG PEPDDISVFL RQILHPSSNF KTHEMQYSSS LPHLLPKNHY  60
GELSSVLNSS VGGIFSSPYG AYNVPASVAN VSSSSVGTMD NDPDEYECES EVGAEDLGVE  120
ASAQPPPPSN TNPKRGRAAE VHNLSERRRR SRINEKMKAL QNLIPNSNKT DKASMLDEAI  180
EYLKQLQLQL QMLTMRNGPS MYPLGLPRVL QQNQVSQLSM GLCGGNGYTN AKAAGALHVN  240
QDTSLNAIFS PSGNRIETKL TPVATMSNVN HSNNAFESES SINVHLDPFQ LSRTTSKGFL  300
REDWLPLHEM NERPSKTVAI GENLASSAPF DASDLKRNTL EACLLRYDHL EL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607890.10.0PREDICTED: transcription factor SPATULA isoform X1
RefseqXP_009607891.10.0PREDICTED: transcription factor SPATULA isoform X2
RefseqXP_016487135.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLM0ZXR31e-165M0ZXR3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000102531e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-32bHLH family protein